STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106767131Glucan endo-1,3-beta-glucosidase 5; Belongs to the glycosyl hydrolase 17 family. (487 aa)    
Predicted Functional Partners:
LOC106764813
Endonuclease V isoform X1.
      
 0.926
LOC106763996
Sialyltransferase-like protein 2; Belongs to the glycosyltransferase 29 family.
      
 0.769
LOC106769762
Armadillo repeat-containing protein LFR isoform X1.
    
 0.666
LOC106766995
Chromatin structure-remodeling complex protein BSH.
    
 0.621
LOC106779861
Uncharacterized protein LOC106779861.
    
 0.621
LOC106753849
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
      
 0.580
LOC106772164
Indole-3-acetic acid-induced protein ARG7-like.
      
 0.547
LOC106780630
Auxin-induced protein 15A-like.
      
 0.547
LOC106780534
Auxin-induced protein 6B-like.
      
 0.547
LOC111240924
Auxin-induced protein 15A-like.
      
 0.547
Your Current Organism:
Vigna radiata
NCBI taxonomy Id: 3916
Other names: Phaseolus aureus, Phaseolus aureus Roxb., Phaseolus radiatus, Phaseolus radiatus L., V. radiata var. radiata, Vigna radiata var. radiata, golden gram, green gram, mung bean
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