STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106769013Splicing factor subunit; Belongs to the SF3B5 family. (87 aa)    
Predicted Functional Partners:
LOC106765153
Splicing factor 3B subunit 6-like protein.
   
 0.989
LOC106774489
PHD finger-like domain-containing protein 5B.
   
 0.986
LOC106775636
Splicing factor 3B subunit 1.
    
 0.983
LOC106775980
Splicing factor 3B subunit 2.
    
 0.983
LOC106759711
Splicing factor 3A subunit 2.
   
 0.979
LOC106757267
Small nuclear ribonucleoprotein G.
   
  0.976
LOC106765620
Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.
   
 0.972
LOC106774457
Splicing factor SF3a60 homolog.
   
 0.972
LOC106765182
Small nuclear ribonucleoprotein-associated protein.
   
 0.969
LOC106757619
Splicing factor 3B subunit 3 isoform X1.
   
 0.964
Your Current Organism:
Vigna radiata
NCBI taxonomy Id: 3916
Other names: Phaseolus aureus, Phaseolus aureus Roxb., Phaseolus radiatus, Phaseolus radiatus L., V. radiata var. radiata, Vigna radiata var. radiata, golden gram, green gram, mung bean
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.