STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106775135tRNA (Cytosine(38)-C(5))-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (385 aa)    
Predicted Functional Partners:
LOC106774474
Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.
   
  
 0.572
LOC106762858
Probable 28S rRNA (Cytosine-C(5))-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
  
 0.571
LOC106755004
Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1; In the N-terminal section; belongs to the aldolase class II family. MtnB subfamily.
   
  
 0.550
LOC106759993
Queuine tRNA-ribosyltransferase catalytic subunit 1; Catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, formi [...]
      
 0.518
LOC106775078
tRNA methyltransferase 10 homolog A.
      
 0.508
LOC106776385
Uncharacterized protein LOC106776385.
    
  0.497
LOC106777099
Uncharacterized protein LOC106777099.
    
  0.497
LOC106753919
Uncharacterized protein LOC106753919.
  
  
 0.470
LOC106768568
Probable inactive DNA (Cytosine-5)-methyltransferase DRM3 isoform X1.
      
 0.461
LOC106769298
tRNA wybutosine-synthesizing protein 2/3/4.
   
  
 0.446
Your Current Organism:
Vigna radiata
NCBI taxonomy Id: 3916
Other names: Phaseolus aureus, Phaseolus aureus Roxb., Phaseolus radiatus, Phaseolus radiatus L., V. radiata var. radiata, Vigna radiata var. radiata, golden gram, green gram, mung bean
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