STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106765566tRNA pseudouridine synthase. (440 aa)    
Predicted Functional Partners:
LOC106765660
DNA-directed RNA polymerases II, IV and V subunit 3.
  
  
 0.655
LOC106776067
DNA-directed RNA polymerases I and III subunit RPAC1.
  
  
 0.655
LOC106757158
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
   
 
 0.612
LOC106763063
Uncharacterized protein LOC106763063.
   
 
 0.602
LOC106763570
54S ribosomal protein L8, mitochondrial-like.
  
  
 0.574
LOC106775059
50S ribosomal protein L17, chloroplastic; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.574
LOC106780693
Uncharacterized protein LOC106780693; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.574
LOC106769298
tRNA wybutosine-synthesizing protein 2/3/4.
   
  
 0.563
LOC106759616
Uncharacterized protein LOC106759616.
   
 0.519
LOC106763563
Uncharacterized protein LOC106763563.
   
 0.519
Your Current Organism:
Vigna radiata
NCBI taxonomy Id: 3916
Other names: Phaseolus aureus, Phaseolus aureus Roxb., Phaseolus radiatus, Phaseolus radiatus L., V. radiata var. radiata, Vigna radiata var. radiata, golden gram, green gram, mung bean
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