STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBAL3_1336[L] COG2925 Exonuclease I. (476 aa)    
Predicted Functional Partners:
BBAL3_855
Conserved domain protein.
 
     0.843
BBAL3_820
Helix-turn-helix domain protein.
       0.777
BBAL3_1931
single-stranded-DNA-specific exonuclease RecJ; [L] COG0608 Single-stranded DNA-specific exonuclease.
    
 
 0.605
BBAL3_1158
[L] COG0629 Single-stranded DNA-binding protein.
    
   0.560
BBAL3_160
[L] COG0629 Single-stranded DNA-binding protein.
    
   0.560
BBAL3_3255
[L] COG0629 Single-stranded DNA-binding protein.
    
   0.560
BBAL3_547
[L] COG0629 Single-stranded DNA-binding protein.
    
   0.560
BBAL3_2418
Hypothetical protein; [L] COG0629 Single-stranded DNA-binding protein.
    
   0.512
BBAL3_2766
Hypothetical protein.
    
   0.512
BBAL3_441
Hypothetical protein; [L] COG0629 Single-stranded DNA-binding protein.
    
   0.512
Your Current Organism:
Brevundimonas sp. BAL3
NCBI taxonomy Id: 391600
Other names: B. sp. BAL3
Server load: low (24%) [HD]