STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBAL3_137[M] COG0860 N-acetylmuramoyl-L-alanine amidase. (389 aa)    
Predicted Functional Partners:
BBAL3_2201
M23 peptidase domain protein; [D] COG4942 Membrane-bound metallopeptidase.
 
 
   0.852
BBAL3_2323
M23 peptidase domain protein; [M] COG0739 Membrane proteins related to metalloendopeptidases.
 
 
   0.805
BBAL3_2777
Peptidase, S54 (rhomboid) family, putative; [R] COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid).
   
   0.788
BBAL3_1093
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
    
   0.775
BBAL3_171
Sporulation and cell division repeat protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
 0.684
BBAL3_3038
NAD dependent epimerase/dehydratase family; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
       0.639
BBAL3_2319
Sporulation and cell division repeat protein.
   
 0.636
BBAL3_899
[S] COG1729 Uncharacterized protein conserved in bacteria.
  
  
 0.628
BBAL3_1504
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
   
    0.581
BBAL3_3451
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
   
    0.581
Your Current Organism:
Brevundimonas sp. BAL3
NCBI taxonomy Id: 391600
Other names: B. sp. BAL3
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