STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBAL3_1763Peptidase family M13; [O] COG3590 Predicted metalloendopeptidase. (677 aa)    
Predicted Functional Partners:
BBAL3_3197
Oxidoreductase, short chain dehydrogenase/reductase family; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.554
ruvB
Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
   
    0.545
polA
DNA polymerase I superfamily; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.539
BBAL3_1089
Hypothetical protein; [J] COG0016 Phenylalanyl-tRNA synthetase alpha subunit.
  
    0.487
BBAL3_1115
Hypothetical protein; [J] COG0532 Translation initiation factor 2 (IF-2; GTPase).
  
    0.487
BBAL3_2747
Bacterial pre-peptidase C-terminal domain family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
    0.487
BBAL3_84
Hypothetical protein.
  
    0.487
BBAL3_1058
Dipeptidyl carboxydipeptidase family.
  
   
 0.457
BBAL3_43
Leukotriene A4 hydrolase, C-terminal family; [E] COG0308 Aminopeptidase N.
 
   
 0.404
BBAL3_1183
Hypothetical protein; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides.
  
     0.401
Your Current Organism:
Brevundimonas sp. BAL3
NCBI taxonomy Id: 391600
Other names: B. sp. BAL3
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