STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBAL3_1908Hypothetical protein. (488 aa)    
Predicted Functional Partners:
BBAL3_1198
TonB-dependent receptor domain protein; [P] COG4772 Outer membrane receptor for Fe3+-dicitrate.
  
  
  0.809
BBAL3_1648
Hypothetical protein; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
    
 0.778
BBAL3_125
OmpA family protein; [M] COG3637 Opacity protein and related surface antigens.
    
  0.707
BBAL3_1258
OmpA family protein; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
    
  0.707
BBAL3_1566
Rickettsia 17 kDa surface antigen family; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
    
  0.707
BBAL3_2716
OmpA family protein; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
    
  0.707
BBAL3_2901
OmpA family protein; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
    
  0.707
pal
Peptidoglycan-associated lipoprotein, putative; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
    
  0.707
BBAL3_2469
POTRA domain, ShlB-type family; [U] COG2831 Hemolysin activation/secretion protein.
     
  0.691
BBAL3_3229
[M] COG1596 Periplasmic protein involved in polysaccharide export.
     
  0.680
Your Current Organism:
Brevundimonas sp. BAL3
NCBI taxonomy Id: 391600
Other names: B. sp. BAL3
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