STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBAL3_1958Helix-turn-helix domain protein; [K] COG1396 Predicted transcriptional regulators. (139 aa)    
Predicted Functional Partners:
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.730
BBAL3_3030
[S] COG3820 Uncharacterized protein conserved in bacteria.
  
     0.722
BBAL3_2444
Glycosyl transferase, group 2 family protein; [R] COG1216 Predicted glycosyltransferases.
    
 0.718
BBAL3_399
HTH DNA binding domain family; [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
   
  0.680
nadK
NAD(+)/NADH kinase, putative; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
  
  
  0.630
BBAL3_615
Methyltransferase domain family; [QR] COG0500 SAM-dependent methyltransferases.
  
     0.629
BBAL3_753
[L] COG1466 DNA polymerase III, delta subunit.
  
     0.611
BBAL3_3351
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein; [T] COG0642 Signal transduction histidine kinase.
  
     0.597
BBAL3_3258
UvrD/REP helicase domain protein; [L] COG0358 DNA primase (bacterial type); Belongs to the helicase family. UvrD subfamily.
  
     0.585
BBAL3_1169
[L] COG2927 DNA polymerase III, chi subunit.
  
     0.576
Your Current Organism:
Brevundimonas sp. BAL3
NCBI taxonomy Id: 391600
Other names: B. sp. BAL3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.