STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBAL3_2343SPFH domain / Band 7 family protein; [C] COG0584 Glycerophosphoryl diester phosphodiesterase. (604 aa)    
Predicted Functional Partners:
BBAL3_1223
PspA/IM30 family; [KT] COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription.
 
  
 0.958
BBAL3_671
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
  
 0.950
BBAL3_1456
[OU] COG1585 Membrane protein implicated in regulation of membrane protease activity.
  
  
 0.738
BBAL3_2295
PspA/IM30 family; [KT] COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription.
 
  
 0.685
BBAL3_1907
Hypothetical protein.
       0.676
BBAL3_2952
SPFH domain / Band 7 family protein; [O] COG0330 Membrane protease subunits, stomatin/prohibitin homologs.
     
 0.469
BBAL3_3209
Hypothetical protein; [O] COG0330 Membrane protease subunits, stomatin/prohibitin homologs.
     
 0.455
BBAL3_1727
Amidohydrolase subfamily; [R] COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase.
       0.444
Your Current Organism:
Brevundimonas sp. BAL3
NCBI taxonomy Id: 391600
Other names: B. sp. BAL3
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