STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBAL3_243Bacterial alpha-L-rhamnosidase family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (1147 aa)    
Predicted Functional Partners:
BBAL3_2670
Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain; [G] COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.914
BBAL3_2155
[S] COG4301 Uncharacterized conserved protein.
   
   0.807
BBAL3_3409
[M] COG5520 O-Glycosyl hydrolase; Belongs to the glycosyl hydrolase 30 family.
  
 
 0.799
BBAL3_1742
Glycosyl hydrolase family 1; [G] COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase; Belongs to the glycosyl hydrolase 1 family.
 
 
 0.765
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
 
  0.761
BBAL3_1559
Glycosyl hydrolase family 3 N terminal domain protein; [G] COG1472 Beta-glucosidase-related glycosidases; Belongs to the glycosyl hydrolase 3 family.
 
  
  0.739
BBAL3_2436
Oxidoreductase, short chain dehydrogenase/reductase family; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
  0.717
BBAL3_117
DEAD/DEAH box helicase domain protein; [LKJ] COG0513 Superfamily II DNA and RNA helicases.
    
  0.694
BBAL3_1324
DbpA RNA binding domain family; [LKJ] COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.
    
  0.694
BBAL3_3324
DEAD/DEAH box helicase domain protein; [LKJ] COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.
    
  0.694
Your Current Organism:
Brevundimonas sp. BAL3
NCBI taxonomy Id: 391600
Other names: B. sp. BAL3
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