STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBAL3_2896Hypothetical protein. (82 aa)    
Predicted Functional Partners:
BBAL3_1062
[R] COG3668 Plasmid stabilization system protein.
 
 
 0.993
BBAL3_3092
[R] COG3668 Plasmid stabilization system protein.
  
 
 0.943
BBAL3_1775
[R] COG3668 Plasmid stabilization system protein.
  
 
 0.932
BBAL3_595
tRNA synthetases class I (E and Q), catalytic domain, putative; [J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.783
BBAL3_3356
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
   
 
 0.678
cobB
[K] COG0846 NAD-dependent protein deacetylases, SIR2 family; Belongs to the sirtuin family. Class III subfamily.
   
    0.567
BBAL3_1502
Base excision DNA repair protein, HhH-GPD family; [L] COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase.
       0.542
BBAL3_2764
UPF0126 domain protein; [S] COG2860 Predicted membrane protein.
       0.542
BBAL3_3176
Hypothetical protein; [S] COG5281 Phage-related minor tail protein.
  
     0.536
BBAL3_2788
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.463
Your Current Organism:
Brevundimonas sp. BAL3
NCBI taxonomy Id: 391600
Other names: B. sp. BAL3
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