STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBAL3_3104Divergent polysaccharide deacetylase family; [S] COG2861 Uncharacterized protein conserved in bacteria. (396 aa)    
Predicted Functional Partners:
rppH
Hydrolase, NUDIX family, putative; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily.
       0.823
BBAL3_298
Tetratricopeptide repeat domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.748
BBAL3_2165
Conserved domain protein; [N] COG4787 Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
   
   0.721
BBAL3_1829
Peptidase, A24 (type IV prepilin peptidase) family; [E] COG0665 Glycine/D-amino acid oxidases (deaminating).
  
     0.712
BBAL3_1698
[S] COG5330 Uncharacterized protein conserved in bacteria.
  
     0.703
BBAL3_341
[S] COG5330 Uncharacterized protein conserved in bacteria.
  
     0.701
BBAL3_2964
[S] COG5330 Uncharacterized protein conserved in bacteria.
  
     0.695
BBAL3_846
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.690
BBAL3_2474
[S] COG5317 Uncharacterized protein conserved in bacteria.
  
     0.672
BBAL3_1206
[U] COG4961 Flp pilus assembly protein TadG.
  
     0.671
Your Current Organism:
Brevundimonas sp. BAL3
NCBI taxonomy Id: 391600
Other names: B. sp. BAL3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.