STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BBAL3_3206[TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain. (178 aa)    
Predicted Functional Partners:
BBAL3_1771
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein; [T] COG0642 Signal transduction histidine kinase.
 
  
 0.983
BBAL3_2996
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein; [T] COG0642 Signal transduction histidine kinase.
 
 0.967
BBAL3_1027
SURF1 family; [S] COG3346 Uncharacterized conserved protein.
 
     0.889
BBAL3_613
[TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain.
     
  0.831
BBAL3_336
PAS fold family; [T] COG0642 Signal transduction histidine kinase.
 
 
 0.794
BBAL3_1855
PAS fold family; [T] COG0642 Signal transduction histidine kinase.
   
 0.762
BBAL3_2362
PAS fold family; [T] COG0642 Signal transduction histidine kinase.
   
 0.762
BBAL3_2720
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein; [T] COG0642 Signal transduction histidine kinase.
   
 0.762
BBAL3_3086
MASE1 domain family; [T] COG0642 Signal transduction histidine kinase.
   
 0.695
BBAL3_1462
PAS fold family; [T] COG0642 Signal transduction histidine kinase.
   
 0.694
Your Current Organism:
Brevundimonas sp. BAL3
NCBI taxonomy Id: 391600
Other names: B. sp. BAL3
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