STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBAL3_3209Hypothetical protein; [O] COG0330 Membrane protease subunits, stomatin/prohibitin homologs. (323 aa)    
Predicted Functional Partners:
ftsH
ATP-dependent metallopeptidase HflB subfamily; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
  
 0.993
BBAL3_2777
Peptidase, S54 (rhomboid) family, putative; [R] COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid).
   
 0.870
BBAL3_719
[R] COG0790 FOG: TPR repeat, SEL1 subfamily.
  
 
   0.753
BBAL3_3343
Retinal pigment epithelial membrane protein; [Q] COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes.
  
  
  0.746
BBAL3_1728
Efflux ABC transporter, permease protein; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
   
 0.708
BBAL3_3181
Phosphoribulokinase / Uridine kinase family; [F] COG0572 Uridine kinase; Belongs to the uridine kinase family.
    
  0.705
BBAL3_2249
Homocysteine S-methyltransferase, putative; [E] COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain.
    
  0.682
BBAL3_2206
Uncharacterized domain HDIG protein; [R] COG3481 Predicted HD-superfamily hydrolase.
  
     0.673
BBAL3_2810
Vesicle transport v-SNARE protein; [M] COG0739 Membrane proteins related to metalloendopeptidases.
  
 
 
 0.673
BBAL3_3242
Low molecular weight phosphotyrosine protein phosphatase; [T] COG0394 Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
    0.633
Your Current Organism:
Brevundimonas sp. BAL3
NCBI taxonomy Id: 391600
Other names: B. sp. BAL3
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