BBAL3_4 protein (Brevundimonas sp. BAL3) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BBAL3_4

[P] COG3004 Na+/H+ antiporter. (367 aa)

Predicted Functional Partners:

BBAL3_2861

0.578

BBAL3_3113

0.578

BBAL3_3333

0.578

BBAL3_506

0.578

BBAL3_98

0.578

BBAL3_1957

0.468

BBAL3_3437

0.468

BBAL3_688

0.407

Your Current Organism:

Brevundimonas sp. BAL3

NCBI taxonomy Id: 391600
Other names: B. sp. BAL3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
BBAL3_1957	BBAL3_3437	Transporter, CPA2 family, putative; [P] COG0475 Kef-type K+ transport systems, membrane components; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.	Transporter, CPA2 family; [P] COG0475 Kef-type K+ transport systems, membrane components; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.	0.920
BBAL3_1957	BBAL3_4	Transporter, CPA2 family, putative; [P] COG0475 Kef-type K+ transport systems, membrane components; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.	[P] COG3004 Na+/H+ antiporter.	0.468
BBAL3_1957	BBAL3_688	Transporter, CPA2 family, putative; [P] COG0475 Kef-type K+ transport systems, membrane components; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.	[E] COG0069 Glutamate synthase domain 2.	0.538
BBAL3_2861	BBAL3_4	Hypothetical protein.	[P] COG3004 Na+/H+ antiporter.	0.578
BBAL3_3113	BBAL3_4	Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	[P] COG3004 Na+/H+ antiporter.	0.578
BBAL3_3333	BBAL3_4	Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	[P] COG3004 Na+/H+ antiporter.	0.578
BBAL3_3437	BBAL3_1957	Transporter, CPA2 family; [P] COG0475 Kef-type K+ transport systems, membrane components; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.	Transporter, CPA2 family, putative; [P] COG0475 Kef-type K+ transport systems, membrane components; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.	0.920
BBAL3_3437	BBAL3_4	Transporter, CPA2 family; [P] COG0475 Kef-type K+ transport systems, membrane components; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.	[P] COG3004 Na+/H+ antiporter.	0.468
BBAL3_3437	BBAL3_688	Transporter, CPA2 family; [P] COG0475 Kef-type K+ transport systems, membrane components; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.	[E] COG0069 Glutamate synthase domain 2.	0.538
BBAL3_4	BBAL3_1957	[P] COG3004 Na+/H+ antiporter.	Transporter, CPA2 family, putative; [P] COG0475 Kef-type K+ transport systems, membrane components; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.	0.468
BBAL3_4	BBAL3_2861	[P] COG3004 Na+/H+ antiporter.	Hypothetical protein.	0.578
BBAL3_4	BBAL3_3113	[P] COG3004 Na+/H+ antiporter.	Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	0.578
BBAL3_4	BBAL3_3333	[P] COG3004 Na+/H+ antiporter.	Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	0.578
BBAL3_4	BBAL3_3437	[P] COG3004 Na+/H+ antiporter.	Transporter, CPA2 family; [P] COG0475 Kef-type K+ transport systems, membrane components; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.	0.468
BBAL3_4	BBAL3_506	[P] COG3004 Na+/H+ antiporter.	TonB family C-terminal domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	0.578
BBAL3_4	BBAL3_688	[P] COG3004 Na+/H+ antiporter.	[E] COG0069 Glutamate synthase domain 2.	0.407
BBAL3_4	BBAL3_98	[P] COG3004 Na+/H+ antiporter.	Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	0.578
BBAL3_506	BBAL3_4	TonB family C-terminal domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	[P] COG3004 Na+/H+ antiporter.	0.578
BBAL3_688	BBAL3_1957	[E] COG0069 Glutamate synthase domain 2.	Transporter, CPA2 family, putative; [P] COG0475 Kef-type K+ transport systems, membrane components; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.	0.538
BBAL3_688	BBAL3_3437	[E] COG0069 Glutamate synthase domain 2.	Transporter, CPA2 family; [P] COG0475 Kef-type K+ transport systems, membrane components; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.	0.538