STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
BBAL3_438[H] COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (459 aa)    
Predicted Functional Partners:
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
 
 
 0.906
BBAL3_1737
OmpW family; [M] COG3047 Outer membrane protein W.
 
  
 0.900
BBAL3_562
Cyd operon protein YbgT, putative; [S] COG4890 Predicted outer membrane lipoprotein.
       0.773
BBAL3_1421
Conserved hypothetical protein; [S] COG1981 Predicted membrane protein.
 
  
 0.760
hemF
Coproporphyrinogen III oxidase, aerobic; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.
    
 0.734
BBAL3_139
[C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2.
       0.724
BBAL3_1824
Bacterial Cytochrome Ubiquinol Oxidase superfamily; [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1.
       0.645
BBAL3_1409
Polyphosphate kinase 2 superfamily; [S] COG2326 Uncharacterized conserved protein.
  
    0.607
BBAL3_2248
[S] COG1981 Predicted membrane protein.
    
 0.549
BBAL3_688
[E] COG0069 Glutamate synthase domain 2.
     
 0.536
Your Current Organism:
Brevundimonas sp. BAL3
NCBI taxonomy Id: 391600
Other names: B. sp. BAL3
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