STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBAL3_52[T] COG3920 Signal transduction histidine kinase. (489 aa)    
Predicted Functional Partners:
BBAL3_1114
Hypothetical protein; [T] COG0784 FOG: CheY-like receiver.
 
  
  0.913
BBAL3_336
PAS fold family; [T] COG0642 Signal transduction histidine kinase.
  
 0.856
BBAL3_2399
Sigma-70, region 4 family; [T] COG0784 FOG: CheY-like receiver.
 
  
 0.726
BBAL3_3191
PAS fold family; [T] COG0642 Signal transduction histidine kinase.
  
 0.696
BBAL3_3233
[T] COG3920 Signal transduction histidine kinase.
 
  
0.684
BBAL3_1855
PAS fold family; [T] COG0642 Signal transduction histidine kinase.
   
 0.668
BBAL3_695
Hypothetical protein; [R] COG3871 Uncharacterized stress protein (general stress protein 26).
  
     0.642
BBAL3_100
Histidine kinase family; [T] COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase).
 
     0.640
BBAL3_1740
CheR methyltransferase, SAM binding domain protein; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
 
  
  0.639
BBAL3_2362
PAS fold family; [T] COG0642 Signal transduction histidine kinase.
    
 0.623
Your Current Organism:
Brevundimonas sp. BAL3
NCBI taxonomy Id: 391600
Other names: B. sp. BAL3
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