STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBAL3_571NlpC/P60 family protein; [L] COG0556 Helicase subunit of the DNA excision repair complex. (262 aa)    
Predicted Functional Partners:
BBAL3_548
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
   
   0.723
BBAL3_475
Cytosol aminopeptidase family, catalytic domain; [E] COG0260 Leucyl aminopeptidase; Belongs to the peptidase M17 family.
       0.647
BBAL3_1090
Hypothetical protein; [C] COG0822 NifU homolog involved in Fe-S cluster formation.
 
     0.634
BBAL3_2135
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.633
BBAL3_2302
[S] COG4246 Uncharacterized protein conserved in bacteria.
  
     0.551
BBAL3_954
Tetratricopeptide repeat domain protein; [R] COG0457 FOG: TPR repeat.
   
   0.523
BBAL3_1426
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.496
BBAL3_804
2'-deoxycytidine 5'-triphosphate deaminase (DCD) superfamily; [F] COG0717 Deoxycytidine deaminase.
  
     0.484
BBAL3_3216
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.481
BBAL3_2833
ParB-like nuclease domain family; [K] COG1475 Predicted transcriptional regulators.
  
     0.449
Your Current Organism:
Brevundimonas sp. BAL3
NCBI taxonomy Id: 391600
Other names: B. sp. BAL3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.