STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Coexpression
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[Homology]
Score
BBAL3_607[P] COG1629 Outer membrane receptor proteins, mostly Fe transport. (823 aa)    
Predicted Functional Partners:
BBAL3_26
Trypsin, putative; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.739
BBAL3_745
TonB-dependent receptor plug domain protein; [P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
 
  0.690
BBAL3_3361
Oxidoreductase, 2OG-Fe(II) oxygenase family; [S] COG3128 Uncharacterized iron-regulated protein.
  
    0.646
BBAL3_1536
[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
 
  0.633
BBAL3_3174
[NO] COG1261 Flagellar basal body P-ring biosynthesis protein.
  
     0.602
BBAL3_1352
Pyridine nucleotide-disulphide oxidoreductase, putative; [R] COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
     
  0.549
BBAL3_3267
Hypothetical protein; [P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
 
  0.548
BBAL3_480
TonB family C-terminal domain protein; [M] COG0810 Periplasmic protein TonB, links inner and outer membranes.
  
     0.545
BBAL3_2335
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.532
BBAL3_526
Cytochrome c subfamily, putative; [P] COG0672 High-affinity Fe2+/Pb2+ permease.
   
    0.530
Your Current Organism:
Brevundimonas sp. BAL3
NCBI taxonomy Id: 391600
Other names: B. sp. BAL3
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