Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BBAL3_656Hypothetical protein. (199 aa)    
Predicted Functional Partners:
BBAL3_2301
Hypothetical protein.
       0.773
BBAL3_435
Phage terminase large subunit (GpA); [R] COG5525 Bacteriophage tail assembly protein.
       0.773
BBAL3_857
Phage portal protein, lambda family; [R] COG5511 Bacteriophage capsid protein.
       0.773
BBAL3_3277
Caudovirus prohead protease, putative; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
       0.675
BBAL3_1110
Hypothetical protein.
       0.500
BBAL3_2792
Hypothetical protein; [S] COG5471 Uncharacterized conserved protein.
       0.500
BBAL3_289
Hypothetical protein.
       0.500
BBAL3_3147
Hypothetical protein.
       0.500
BBAL3_1634
Hypothetical protein.
       0.447
BBAL3_732
Hypothetical protein; [Q] COG2931 RTX toxins and related Ca2+-binding proteins.
       0.447
Your Current Organism:
Brevundimonas sp. BAL3
NCBI taxonomy Id: 391600
Other names: B. sp. BAL3
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