STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBAL3_693Conserved hypothetical protein, putative; [J] COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family. (244 aa)    
Predicted Functional Partners:
BBAL3_290
Methyltransferase small domain family; [J] COG2813 16S RNA G1207 methylase RsmC; Belongs to the methyltransferase superfamily.
 
   
 0.904
cmk
[F] COG0283 Cytidylate kinase.
 
  
 0.754
der
GTPase, putative; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.737
BBAL3_2507
[L] COG0708 Exonuclease III.
  
    0.683
BBAL3_2892
Exodeoxyribonuclease III (xth) subfamily; [L] COG0708 Exonuclease III.
  
    0.683
BBAL3_2244
Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
  
  
 0.648
BBAL3_2666
Prevent-host-death family protein, putative; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.642
uppP
Undecaprenol kinase, putative; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
 
     0.592
BBAL3_2754
Hypothetical protein; [C] COG0372 Citrate synthase.
       0.452
rplU
Ribosomal protein L21, putative; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
   0.447
Your Current Organism:
Brevundimonas sp. BAL3
NCBI taxonomy Id: 391600
Other names: B. sp. BAL3
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