STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBAL3_74Cyclic diguanylate phosphodiesterase (EAL) domain protein; [T] COG2200 FOG: EAL domain. (424 aa)    
Predicted Functional Partners:
BBAL3_2602
[T] COG2199 FOG: GGDEF domain.
 
 
 0.931
BBAL3_1100
Hypothetical protein; [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain.
  
 
 0.888
BBAL3_338
GGDEF domain protein; [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain.
  
 
  0.834
BBAL3_1476
Hypothetical protein; [T] COG2199 FOG: GGDEF domain; GGDEF domain, putative.
 
 
  0.833
BBAL3_3151
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
    0.732
BBAL3_3174
[NO] COG1261 Flagellar basal body P-ring biosynthesis protein.
  
    0.700
BBAL3_298
Tetratricopeptide repeat domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.699
BBAL3_3321
[M] COG3064 Membrane protein involved in colicin uptake.
  
 0.690
BBAL3_470
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
  
 0.659
BBAL3_1023
HAD-superfamily subfamily IIA hydrolase, TIGR01459; [G] COG0647 Predicted sugar phosphatases of the HAD superfamily.
       0.639
Your Current Organism:
Brevundimonas sp. BAL3
NCBI taxonomy Id: 391600
Other names: B. sp. BAL3
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