BBAL3_85 protein (Brevundimonas sp. BAL3) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

BBAL3_85

Hypothetical protein; [M] COG3307 Lipid A core - O-antigen ligase and related enzymes. (201 aa)

Predicted Functional Partners:

BBAL3_3223

0.851

BBAL3_3172

0.721

BBAL3_3229

0.668

BBAL3_1340

0.596

BBAL3_2444

0.585

BBAL3_1904

0.492

BBAL3_1909

0.446

BBAL3_2881

0.421

BBAL3_2186

0.402

BBAL3_2565

0.402

Your Current Organism:

Brevundimonas sp. BAL3

NCBI taxonomy Id: 391600
Other names: B. sp. BAL3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
BBAL3_1340	BBAL3_1909	Glycosyl transferase, group 2 family protein; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.	Bacterial sugar transferase, putative; [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis.	0.870
BBAL3_1340	BBAL3_2186	Glycosyl transferase, group 2 family protein; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.	Polysaccharide biosynthesis protein; [R] COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.	0.572
BBAL3_1340	BBAL3_2444	Glycosyl transferase, group 2 family protein; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.	Glycosyl transferase, group 2 family protein; [R] COG1216 Predicted glycosyltransferases.	0.903
BBAL3_1340	BBAL3_2565	Glycosyl transferase, group 2 family protein; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.	[R] COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.	0.572
BBAL3_1340	BBAL3_2881	Glycosyl transferase, group 2 family protein; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.	Cupin domain protein; [G] COG0662 Mannose-6-phosphate isomerase.	0.600
BBAL3_1340	BBAL3_3172	Glycosyl transferase, group 2 family protein; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.	[M] COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.	0.675
BBAL3_1340	BBAL3_3223	Glycosyl transferase, group 2 family protein; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.	Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase subfamily; [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis.	0.985
BBAL3_1340	BBAL3_3229	Glycosyl transferase, group 2 family protein; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.	[M] COG1596 Periplasmic protein involved in polysaccharide export.	0.700
BBAL3_1340	BBAL3_85	Glycosyl transferase, group 2 family protein; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.	Hypothetical protein; [M] COG3307 Lipid A core - O-antigen ligase and related enzymes.	0.596
BBAL3_1904	BBAL3_85	Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	Hypothetical protein; [M] COG3307 Lipid A core - O-antigen ligase and related enzymes.	0.492
BBAL3_1909	BBAL3_1340	Bacterial sugar transferase, putative; [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis.	Glycosyl transferase, group 2 family protein; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.	0.870
BBAL3_1909	BBAL3_2186	Bacterial sugar transferase, putative; [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis.	Polysaccharide biosynthesis protein; [R] COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.	0.619
BBAL3_1909	BBAL3_2444	Bacterial sugar transferase, putative; [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis.	Glycosyl transferase, group 2 family protein; [R] COG1216 Predicted glycosyltransferases.	0.883
BBAL3_1909	BBAL3_2565	Bacterial sugar transferase, putative; [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis.	[R] COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.	0.537
BBAL3_1909	BBAL3_2881	Bacterial sugar transferase, putative; [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis.	Cupin domain protein; [G] COG0662 Mannose-6-phosphate isomerase.	0.631
BBAL3_1909	BBAL3_3172	Bacterial sugar transferase, putative; [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis.	[M] COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.	0.972
BBAL3_1909	BBAL3_3223	Bacterial sugar transferase, putative; [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis.	Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase subfamily; [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis.	0.854
BBAL3_1909	BBAL3_3229	Bacterial sugar transferase, putative; [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis.	[M] COG1596 Periplasmic protein involved in polysaccharide export.	0.794
BBAL3_1909	BBAL3_85	Bacterial sugar transferase, putative; [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis.	Hypothetical protein; [M] COG3307 Lipid A core - O-antigen ligase and related enzymes.	0.446
BBAL3_2186	BBAL3_1340	Polysaccharide biosynthesis protein; [R] COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.	Glycosyl transferase, group 2 family protein; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.	0.572