STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBAL3_878ABC transporter, ATP-binding protein, putative; [P] COG4559 ABC-type hemin transport system, ATPase component. (251 aa)    
Predicted Functional Partners:
BBAL3_2058
Hypothetical protein; [P] COG4558 ABC-type hemin transport system, periplasmic component.
 
 0.999
BBAL3_744
ABC transporter, FeCT family, permease protein; [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.999
BBAL3_2574
Transcriptional regulator, TetR family protein; [K] COG1309 Transcriptional regulator.
       0.758
BBAL3_849
ATPase, AAA family protein; [O] COG0464 ATPases of the AAA+ class.
  
     0.739
BBAL3_526
Cytochrome c subfamily, putative; [P] COG0672 High-affinity Fe2+/Pb2+ permease.
   
  
 0.706
cysS
[J] COG0215 Cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
     0.634
BBAL3_9
[P] COG3639 ABC-type phosphate/phosphonate transport system, permease component.
    
 0.611
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
     0.596
BBAL3_2502
ABC transporter, ATP-binding protein; [R] COG1137 ABC-type (unclassified) transport system, ATPase component.
  
  
 
0.584
rpsK
Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
     0.578
Your Current Organism:
Brevundimonas sp. BAL3
NCBI taxonomy Id: 391600
Other names: B. sp. BAL3
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