STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBAL3_960[GEPR] COG0477 Permeases of the major facilitator superfamily. (432 aa)    
Predicted Functional Partners:
BBAL3_1243
Peptidase, S9A/B/C family, catalytic domain protein; [E] COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases.
       0.580
BBAL3_247
HAD-superfamily hydrolase, subfamily IB (PSPase-like), putative; Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L- serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
  0.523
BBAL3_1397
Auxiliary transport protein, MFP family, putative; [V] COG1566 Multidrug resistance efflux pump.
   
 0.520
BBAL3_1828
Auxiliary transport protein, MFP family, putative; [M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
   
 0.520
BBAL3_479
Auxiliary transport protein, MFP family, putative; [V] COG1566 Multidrug resistance efflux pump.
   
 0.520
BBAL3_512
Auxiliary transport protein, MFP family, putative; [V] COG1566 Multidrug resistance efflux pump.
   
 0.520
BBAL3_122
[MU] COG1538 Outer membrane protein.
   
 0.516
BBAL3_3208
Type I secretion outer membrane protein, TolC family; [MU] COG1538 Outer membrane protein.
   
 0.516
BBAL3_915
[MU] COG1538 Outer membrane protein.
   
 0.516
BBAL3_1788
Auxiliary transport protein, MFP family, putative; [M] COG0845 Membrane-fusion protein.
   
  0.509
Your Current Organism:
Brevundimonas sp. BAL3
NCBI taxonomy Id: 391600
Other names: B. sp. BAL3
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