STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP69529.1Putative outer membrane protein, probably involved in nutrient binding; COG1629 Outer membrane receptor proteins, mostly Fe transport. (783 aa)    
Predicted Functional Partners:
EDP69528.1
Possible anti-sigma factor; COG3712 Fe2+-dicitrate sensor, membrane component.
 
    0.885
EDP69527.1
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
    0.774
EDP72053.1
Possible anti-sigma factor; COG3712 Fe2+-dicitrate sensor, membrane component.
  
    0.738
EDP70312.1
Possible anti-sigma factor; COG3712 Fe2+-dicitrate sensor, membrane component.
  
    0.737
EDP71752.1
Possible anti-sigma factor; COG3712 Fe2+-dicitrate sensor, membrane component.
  
    0.724
EDP71022.1
Possible anti-sigma factor; COG3712 Fe2+-dicitrate sensor, membrane component.
  
    0.711
EDP71024.1
Hypothetical protein.
  
 
   0.675
EDP71023.1
Putative RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.668
EDP72052.1
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.648
EDP70337.1
TonB; COG0810 Periplasmic protein TonB, links inner and outer membranes.
  
   0.610
Your Current Organism:
Flavobacteriales bacterium ALC1
NCBI taxonomy Id: 391603
Other names: F. bacterium ALC-1, Flavobacteriales bacterium ALC-1
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