STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP71038.1Radical SAM domain protein; COG1032 Fe-S oxidoreductase. (517 aa)    
Predicted Functional Partners:
EDP71037.1
Methyltransferase small; COG2890 Methylase of polypeptide chain release factors; Belongs to the methyltransferase superfamily.
 
     0.925
EDP71044.1
Fe-S protein, radical SAM family; COG1032 Fe-S oxidoreductase.
  
     0.775
EDP71048.1
Hypothetical protein; COG1032 Fe-S oxidoreductase.
 
     0.775
EDP71045.1
Radical SAM domain protein; COG1032 Fe-S oxidoreductase.
  
     0.774
EDP71039.1
Hypothetical protein; COG0457 FOG: TPR repeat.
       0.773
EDP71040.1
Hypothetical protein.
       0.773
EDP71046.1
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
  
     0.768
EDP71247.1
Hypothetical protein; COG0784 FOG: CheY-like receiver.
  
 
 0.746
EDP71041.1
COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.
       0.548
EDP71959.1
Hypothetical protein.
   
    0.501
Your Current Organism:
Flavobacteriales bacterium ALC1
NCBI taxonomy Id: 391603
Other names: F. bacterium ALC-1, Flavobacteriales bacterium ALC-1
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