STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP71164.1COG1629 Outer membrane receptor proteins, mostly Fe transport. (521 aa)    
Predicted Functional Partners:
EDP71163.1
Putative outer membrane protein.
       0.731
EDP71161.1
Hypothetical protein; COG0272 NAD-dependent DNA ligase (contains BRCT domain type II).
 
     0.622
EDP70332.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.576
EDP69755.1
Hypothetical protein.
   
  0.543
EDP71930.1
Hypothetical protein.
   
  0.543
EDP72849.1
Hypothetical protein; COG0480 Translation elongation factors (GTPases).
   
  0.543
EDP71293.1
Hypothetical protein; COG2319 FOG: WD40 repeat.
  
 
   0.541
EDP72074.1
DdaH family protein; COG1834 N-Dimethylarginine dimethylaminohydrolase.
  
     0.483
EDP71924.1
Hypothetical protein.
  
 
   0.479
atpD
H(+)-transporting two-sector ATPase, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
       0.475
Your Current Organism:
Flavobacteriales bacterium ALC1
NCBI taxonomy Id: 391603
Other names: F. bacterium ALC-1, Flavobacteriales bacterium ALC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.