STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP71237.1Hypothetical protein. (334 aa)    
Predicted Functional Partners:
EDP71236.1
B-glycosyltransferase-related protein, glycosyltransferase family 2 protein; COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
 
     0.919
EDP72446.1
Hypothetical protein; COG0491 Zn-dependent hydrolases, including glyoxylases.
  
     0.702
EDP71057.1
Hypothetical protein; COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases.
  
     0.670
EDP69654.1
COG4122 Predicted O-methyltransferase.
  
     0.640
EDP72659.1
Hypothetical protein.
  
    0.639
EDP71564.1
Putative transmembrane glycosyltransferase.
 
     0.625
EDP71238.1
Hypothetical protein; COG0658 Predicted membrane metal-binding protein.
 
     0.621
EDP71235.1
COG4760 Predicted membrane protein.
       0.613
ruvC
Holliday junction resolvase; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
       0.610
EDP71240.1
Coproporphyrinogen oxidase (coproporphyrinogen III oxidase); Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
       0.578
Your Current Organism:
Flavobacteriales bacterium ALC1
NCBI taxonomy Id: 391603
Other names: F. bacterium ALC-1, Flavobacteriales bacterium ALC-1
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