EDP71249.1 protein (Flavobacteriales bacterium ALC1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EDP71249.1

Hypothetical protein; COG0443 Molecular chaperone. (94 aa)

Predicted Functional Partners:

EDP71246.1

0.957

EDP71248.1

0.957

EDP71247.1

0.922

EDP71250.1

0.920

EDP71559.1

0.912

EDP71352.1

0.854

EDP70198.1

0.854

EDP71926.1

0.854

EDP71932.1

0.854

EDP72826.1

0.854

Your Current Organism:

Flavobacteriales bacterium ALC1

NCBI taxonomy Id: 391603
Other names: F. bacterium ALC-1, Flavobacteriales bacterium ALC-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDP70198.1	EDP71246.1	FBALC1_11712	FBALC1_02142	Two-component system sensor histidine kinase/response; COG0642 Signal transduction histidine kinase.	Response regulator receiver domain protein (CheY-like).	0.955
EDP70198.1	EDP71248.1	FBALC1_11712	FBALC1_02152	Two-component system sensor histidine kinase/response; COG0642 Signal transduction histidine kinase.	COG0642 Signal transduction histidine kinase.	0.999
EDP70198.1	EDP71249.1	FBALC1_11712	FBALC1_02157	Two-component system sensor histidine kinase/response; COG0642 Signal transduction histidine kinase.	Hypothetical protein; COG0443 Molecular chaperone.	0.854
EDP70198.1	EDP71250.1	FBALC1_11712	FBALC1_02162	Two-component system sensor histidine kinase/response; COG0642 Signal transduction histidine kinase.	Two-component system response regulator.	0.603
EDP70198.1	EDP71352.1	FBALC1_11712	FBALC1_02672	Two-component system sensor histidine kinase/response; COG0642 Signal transduction histidine kinase.	Two-component system sensor histidine kinase/response; COG0642 Signal transduction histidine kinase.	0.997
EDP70198.1	EDP71559.1	FBALC1_11712	FBALC1_03707	Two-component system sensor histidine kinase/response; COG0642 Signal transduction histidine kinase.	COG0642 Signal transduction histidine kinase.	0.998
EDP70198.1	EDP71926.1	FBALC1_11712	FBALC1_12532	Two-component system sensor histidine kinase/response; COG0642 Signal transduction histidine kinase.	Two-component system sensor histidine kinase/response regulator, hybrid ('one-component system').	0.997
EDP70198.1	EDP71932.1	FBALC1_11712	FBALC1_12562	Two-component system sensor histidine kinase/response; COG0642 Signal transduction histidine kinase.	Two-component system sensor histidine kinase/response.	0.997
EDP70198.1	EDP72826.1	FBALC1_11712	FBALC1_17032	Two-component system sensor histidine kinase/response; COG0642 Signal transduction histidine kinase.	Sensor histidine kinase/response regulator.	0.997
EDP71246.1	EDP70198.1	FBALC1_02142	FBALC1_11712	Response regulator receiver domain protein (CheY-like).	Two-component system sensor histidine kinase/response; COG0642 Signal transduction histidine kinase.	0.955
EDP71246.1	EDP71247.1	FBALC1_02142	FBALC1_02147	Response regulator receiver domain protein (CheY-like).	Hypothetical protein; COG0784 FOG: CheY-like receiver.	0.923
EDP71246.1	EDP71248.1	FBALC1_02142	FBALC1_02152	Response regulator receiver domain protein (CheY-like).	COG0642 Signal transduction histidine kinase.	0.999
EDP71246.1	EDP71249.1	FBALC1_02142	FBALC1_02157	Response regulator receiver domain protein (CheY-like).	Hypothetical protein; COG0443 Molecular chaperone.	0.957
EDP71246.1	EDP71250.1	FBALC1_02142	FBALC1_02162	Response regulator receiver domain protein (CheY-like).	Two-component system response regulator.	0.712
EDP71246.1	EDP71352.1	FBALC1_02142	FBALC1_02672	Response regulator receiver domain protein (CheY-like).	Two-component system sensor histidine kinase/response; COG0642 Signal transduction histidine kinase.	0.949
EDP71246.1	EDP71559.1	FBALC1_02142	FBALC1_03707	Response regulator receiver domain protein (CheY-like).	COG0642 Signal transduction histidine kinase.	0.883
EDP71246.1	EDP71926.1	FBALC1_02142	FBALC1_12532	Response regulator receiver domain protein (CheY-like).	Two-component system sensor histidine kinase/response regulator, hybrid ('one-component system').	0.957
EDP71246.1	EDP71932.1	FBALC1_02142	FBALC1_12562	Response regulator receiver domain protein (CheY-like).	Two-component system sensor histidine kinase/response.	0.951
EDP71246.1	EDP72826.1	FBALC1_02142	FBALC1_17032	Response regulator receiver domain protein (CheY-like).	Sensor histidine kinase/response regulator.	0.949
EDP71247.1	EDP71246.1	FBALC1_02147	FBALC1_02142	Hypothetical protein; COG0784 FOG: CheY-like receiver.	Response regulator receiver domain protein (CheY-like).	0.923