STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP71320.1Phenazine biosynthesis PhzC/PhzF protein; COG2207 AraC-type DNA-binding domain-containing proteins. (369 aa)    
Predicted Functional Partners:
EDP71321.1
COG0463 Glycosyltransferases involved in cell wall biogenesis.
       0.701
EDP72770.1
Pyruvate flavodoxin dehydrogenase.
     
 0.641
EDP72453.1
Bifunctional protein: malate dehydrogenase; phosphotransacetylase.
   
 
  0.601
EDP71322.1
Hypothetical protein; COG0210 Superfamily I DNA and RNA helicases.
       0.504
EDP71323.1
COG3000 Sterol desaturase.
       0.504
EDP71318.1
YCE I like family protein; Belongs to the UPF0312 family.
       0.496
EDP71319.1
Hypothetical protein.
       0.496
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.428
EDP71617.1
Hypothetical protein.
  
  
 
0.406
Your Current Organism:
Flavobacteriales bacterium ALC1
NCBI taxonomy Id: 391603
Other names: F. bacterium ALC-1, Flavobacteriales bacterium ALC-1
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