STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP71542.12-aminomuconic semialdehyde dehydrogenase; COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. (468 aa)    
Predicted Functional Partners:
fmt-2
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
      0.899
EDP72770.1
Pyruvate flavodoxin dehydrogenase.
   
 0.864
EDP71467.1
Oxidoreductase.
  
 0.775
EDP72453.1
Bifunctional protein: malate dehydrogenase; phosphotransacetylase.
  
 
 0.767
EDP71540.1
Putative short-chain dehydrogenase/reductase.
  0.762
EDP71371.1
COG0067 Glutamate synthase domain 1.
  
 
 0.760
EDP71538.1
2-amino-3-carboxylmuconate-6-semialdehyde decarboxylase; COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
  0.741
EDP70119.1
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
   
 
 0.732
EDP70118.1
Amino acid adenylation; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
    
 0.730
EDP71386.1
COG0527 Aspartokinases.
  
 0.694
Your Current Organism:
Flavobacteriales bacterium ALC1
NCBI taxonomy Id: 391603
Other names: F. bacterium ALC-1, Flavobacteriales bacterium ALC-1
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