STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP71655.1COG2356 Endonuclease I. (667 aa)    
Predicted Functional Partners:
EDP71922.1
Hypothetical protein.
  
     0.729
EDP71924.1
Hypothetical protein.
  
     0.726
EDP71923.1
Hypothetical protein.
  
     0.724
EDP71921.1
Hypothetical protein.
  
     0.683
EDP69538.1
Hypothetical protein; COG0419 ATPase involved in DNA repair.
  
     0.660
EDP71899.1
CHU large protein; COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component.
  
     0.624
EDP72746.1
CHU large protein; uncharacterized.
  
     0.607
EDP71925.1
Hypothetical protein; COG3291 FOG: PKD repeat.
  
     0.594
EDP72321.1
Hypothetical protein; COG0457 FOG: TPR repeat.
  
     0.594
EDP69457.1
Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
     0.556
Your Current Organism:
Flavobacteriales bacterium ALC1
NCBI taxonomy Id: 391603
Other names: F. bacterium ALC-1, Flavobacteriales bacterium ALC-1
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