STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP70468.1COG1609 Transcriptional regulators. (340 aa)    
Predicted Functional Partners:
EDP71371.1
COG0067 Glutamate synthase domain 1.
    
 
 0.849
EDP70118.1
Amino acid adenylation; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
    
 
 0.675
hisS
histidyl-tRNA synthetase; COG0524 Sugar kinases, ribokinase family.
 
 
  0.650
EDP70470.1
COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase.
 
     0.625
EDP70471.1
COG1609 Transcriptional regulators.
 
    
0.578
guaA-2
GMP synthetase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
   0.534
ribB
Bifunctional protein: GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
   0.534
EDP71357.1
Gluconokinase and phosphogluconate dehydrogenase (decarboxylating) fusion; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
  
 
 0.494
EDP70451.1
Gluconokinase and phosphogluconate dehydrogenase (decarboxylating) fusion; COG3265 Gluconate kinase; Belongs to the 6-phosphogluconate dehydrogenase family.
  
 
 0.494
EDP72577.1
Ribose-phosphate diphosphokinase (phosphoribosylpyrophosphate synthetase); COG0462 Phosphoribosylpyrophosphate synthetase.
    
 0.474
Your Current Organism:
Flavobacteriales bacterium ALC1
NCBI taxonomy Id: 391603
Other names: F. bacterium ALC-1, Flavobacteriales bacterium ALC-1
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