STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP70474.1Hypothetical protein; COG2202 FOG: PAS/PAC domain. (130 aa)    
Predicted Functional Partners:
fmt
methionyl-tRNA formyltransferase; COG3911 Predicted ATPase.
  
     0.749
EDP71896.1
COG1612 Uncharacterized protein required for cytochrome oxidase assembly.
  
     0.703
EDP70475.1
4-amino-4-deoxychorismate lyase, putative; COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase.
 
     0.692
EDP72766.1
COG0333 Ribosomal protein L32.
  
     0.689
EDP72614.1
Hypothetical protein; COG0016 Phenylalanyl-tRNA synthetase alpha subunit.
  
     0.672
EDP71611.1
Hypothetical protein.
  
     0.668
EDP71179.1
COG1587 Uroporphyrinogen-III synthase.
  
     0.626
EDP69981.1
Hypothetical protein; COG1196 Chromosome segregation ATPases.
 
     0.586
EDP71637.1
Hypothetical protein; COG0294 Dihydropteroate synthase and related enzymes.
  
     0.558
EDP70926.1
Putative gliding motility protein; COG1774 Uncharacterized homolog of PSP1.
  
     0.548
Your Current Organism:
Flavobacteriales bacterium ALC1
NCBI taxonomy Id: 391603
Other names: F. bacterium ALC-1, Flavobacteriales bacterium ALC-1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.