STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP70597.1Putative flagellar motor protein MotB; COG0840 Methyl-accepting chemotaxis protein. (285 aa)    
Predicted Functional Partners:
EDP72728.1
OmpA domain protein; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
  
   0.717
EDP72739.1
COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
  
   0.602
EDP72193.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
  
  
 0.583
EDP70598.1
B-glycosyltransferase, glycosyltransferase family 2 protein; COG1216 Predicted glycosyltransferases.
       0.544
EDP70599.1
Hypothetical protein.
       0.533
EDP70600.1
Hypothetical protein.
 
     0.521
EDP72316.1
Hypothetical protein; COG1131 ABC-type multidrug transport system, ATPase component.
  
  
 0.514
EDP70348.1
YajC; COG1862 Preprotein translocase subunit YajC.
  
 
 
 0.512
EDP72006.1
Outer membrane protein, peptidoglycan-associated lipoprotein.
  
   0.489
EDP72218.1
Outer membrane protein and related peptidoglycan-associated (lipo)protein-like protein.
  
   0.481
Your Current Organism:
Flavobacteriales bacterium ALC1
NCBI taxonomy Id: 391603
Other names: F. bacterium ALC-1, Flavobacteriales bacterium ALC-1
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