STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP70620.1Hypothetical protein; COG0566 rRNA methylases. (213 aa)    
Predicted Functional Partners:
EDP69931.1
COG0304 3-oxoacyl-(acyl-carrier-protein) synthase.
 
     0.785
EDP69686.1
Hypothetical protein.
 
     0.781
EDP71222.1
Hypothetical protein; COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain).
 
    0.780
EDP72878.1
Hypothetical protein.
 
     0.776
EDP69520.1
Hypothetical protein.
 
     0.775
EDP70704.1
Hypothetical protein; COG0044 Dihydroorotase and related cyclic amidohydrolases.
 
     0.774
EDP72583.1
Hypothetical protein.
  
     0.765
EDP72394.1
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
    
 0.749
EDP69522.1
Hypothetical protein; COG0419 ATPase involved in DNA repair.
 
     0.690
EDP70621.1
Hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.643
Your Current Organism:
Flavobacteriales bacterium ALC1
NCBI taxonomy Id: 391603
Other names: F. bacterium ALC-1, Flavobacteriales bacterium ALC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.