STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP70673.1Ferredoxin 2 with 4Fe-4S binding domain; COG1145 Ferredoxin. (117 aa)    
Predicted Functional Partners:
EDP72770.1
Pyruvate flavodoxin dehydrogenase.
  
 0.999
EDP70118.1
Amino acid adenylation; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 0.969
acpP
Hypothetical protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 0.963
EDP69594.1
Hypothetical protein; COG0702 Predicted nucleoside-diphosphate-sugar epimerases.
   
 0.945
EDP70740.1
Hypothetical protein.
   
 0.945
EDP70016.1
Hypothetical protein.
   
 0.945
EDP72320.1
COG1428 Deoxynucleoside kinases.
   
 0.931
EDP72395.1
Deoxyguanosine kinase/deoxyadenosine kinase subunit; COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase.
   
 0.931
EDP69997.1
COG0657 Esterase/lipase.
   
   0.870
EDP71313.1
Pyridine nucleotide-disulphide oxidoreductase domain protein; COG0348 Polyferredoxin.
  
 0.851
Your Current Organism:
Flavobacteriales bacterium ALC1
NCBI taxonomy Id: 391603
Other names: F. bacterium ALC-1, Flavobacteriales bacterium ALC-1
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