STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP69762.1Transcriptional regulator, AraC-type; COG2207 AraC-type DNA-binding domain-containing proteins. (287 aa)    
Predicted Functional Partners:
EDP72123.1
Transcriptional regulator, AraC family protein; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.745
EDP72770.1
Pyruvate flavodoxin dehydrogenase.
  
  
 0.696
EDP71347.1
COG2207 AraC-type DNA-binding domain-containing proteins.
 
   0.682
ribB
Bifunctional protein: GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.646
EDP70954.1
Regulatory protein; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.630
EDP71371.1
COG0067 Glutamate synthase domain 1.
    
  0.616
EDP72453.1
Bifunctional protein: malate dehydrogenase; phosphotransacetylase.
   
 
  0.601
EDP71171.1
Transcriptional regulator, AraC family protein; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.589
EDP70964.1
Transcriptional regulator.
  
     0.560
EDP70366.1
Transcriptional regulator, AraC family protein.
  
     0.509
Your Current Organism:
Flavobacteriales bacterium ALC1
NCBI taxonomy Id: 391603
Other names: F. bacterium ALC-1, Flavobacteriales bacterium ALC-1
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