STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
deoCDeoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. (220 aa)    
Predicted Functional Partners:
EDP69948.1
Probable transcriptional regulator, MerR family protein; COG0789 Predicted transcriptional regulators.
   
 0.927
EDP70222.1
Putative phosphoglucomutase; COG1109 Phosphomannomutase.
 
 
 0.871
EDP72191.1
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
 
 
 0.861
EDP72770.1
Pyruvate flavodoxin dehydrogenase.
  
 
  0.843
EDP69853.1
COG0813 Purine-nucleoside phosphorylase.
 
  
 0.795
EDP69855.1
Phosphoglycerate mutase.
    
  0.755
tpiA-2
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
  
 0.709
EDP69854.1
PaiA; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
    
  0.700
EDP72577.1
Ribose-phosphate diphosphokinase (phosphoribosylpyrophosphate synthetase); COG0462 Phosphoribosylpyrophosphate synthetase.
    
 0.680
pgi
COG0166 Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.644
Your Current Organism:
Flavobacteriales bacterium ALC1
NCBI taxonomy Id: 391603
Other names: F. bacterium ALC-1, Flavobacteriales bacterium ALC-1
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