STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rplT50S ribosomal protein L20; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases. (223 aa)    
Predicted Functional Partners:
EDP72774.1
Putative adenylate/guanylate cyclase; COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain).
  
 0.914
EDP69954.1
Thioredoxin-like protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
       0.757
EDP72770.1
Pyruvate flavodoxin dehydrogenase.
    
 0.757
EDP71371.1
COG0067 Glutamate synthase domain 1.
    
 0.751
EDP72259.1
Phenylacetic acid degradation protein paaN; COG1012 NAD-dependent aldehyde dehydrogenases.
    
 0.650
EDP72453.1
Bifunctional protein: malate dehydrogenase; phosphotransacetylase.
   
 
 0.622
guaB
Putative inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
  0.604
EDP71559.1
COG0642 Signal transduction histidine kinase.
   
 0.554
EDP70252.1
Transcriptional regulator, Crp/Fnr family protein; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.
  
  
 
0.541
EDP70281.1
Hypothetical protein; COG0457 FOG: TPR repeat.
  
 
  0.538
Your Current Organism:
Flavobacteriales bacterium ALC1
NCBI taxonomy Id: 391603
Other names: F. bacterium ALC-1, Flavobacteriales bacterium ALC-1
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