STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP70050.1Outer membrane protein, peptidoglycan-associated lipoprotein; COG0457 FOG: TPR repeat. (636 aa)    
Predicted Functional Partners:
EDP70049.1
COG5651 PPE-repeat proteins.
 
     0.935
EDP72711.1
Hypothetical protein.
 
0.859
EDP71788.1
Hypothetical protein; COG0457 FOG: TPR repeat.
 
 
 0.829
EDP70048.1
VCBS.
  
  0.807
EDP72583.1
Hypothetical protein.
 
  
 0.788
EDP69438.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
  
     0.740
EDP72185.1
Hypothetical protein.
  
     0.740
EDP70337.1
TonB; COG0810 Periplasmic protein TonB, links inner and outer membranes.
 
 
 
 0.711
adk
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
  
  0.701
EDP69858.1
COG0691 tmRNA-binding protein.
 
  
  0.688
Your Current Organism:
Flavobacteriales bacterium ALC1
NCBI taxonomy Id: 391603
Other names: F. bacterium ALC-1, Flavobacteriales bacterium ALC-1
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