STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP71880.1COG2035 Predicted membrane protein. (339 aa)    
Predicted Functional Partners:
EDP71879.1
COG2035 Predicted membrane protein.
 
    
0.799
EDP71881.1
COG0169 Shikimate 5-dehydrogenase.
       0.784
EDP71878.1
COG0457 FOG: TPR repeat.
       0.558
EDP71882.1
Hypothetical protein; COG0419 ATPase involved in DNA repair.
       0.554
EDP69632.1
Hypothetical protein; COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family.
     
 0.526
EDP70127.1
Putative lipd A biosynthesis related exported protein; COG1560 Lauroyl/myristoyl acyltransferase.
    
  0.490
EDP72508.1
Hypothetical protein.
  
     0.479
EDP72575.1
Hypothetical protein; COG0419 ATPase involved in DNA repair.
  
     0.474
EDP69959.1
Hypothetical protein; COG0760 Parvulin-like peptidyl-prolyl isomerase.
  
     0.461
EDP71408.1
TPR domain protein.
  
     0.400
Your Current Organism:
Flavobacteriales bacterium ALC1
NCBI taxonomy Id: 391603
Other names: F. bacterium ALC-1, Flavobacteriales bacterium ALC-1
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