STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP72041.1GCN5-related N-acetyltransferase; COG0662 Mannose-6-phosphate isomerase. (121 aa)    
Predicted Functional Partners:
EDP69680.1
COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
  
 
 0.824
EDP72042.1
Hypothetical protein; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
       0.783
EDP72040.1
Hypothetical protein; COG0433 Predicted ATPase.
       0.750
EDP72043.1
Pseudouridine synthase, Rsu; Belongs to the pseudouridine synthase RsuA family.
       0.714
EDP72039.1
Hypothetical protein.
       0.688
EDP72787.1
COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase.
     
 0.621
EDP71347.1
COG2207 AraC-type DNA-binding domain-containing proteins.
 
  0.555
EDP72044.1
Hypothetical protein; COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases.
       0.537
metG
methionine--tRNA ligase (methionyl-tRNA synthetase); Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
 
  0.534
EDP70173.1
Hypothetical protein; COG0428 Predicted divalent heavy-metal cations transporter.
  
     0.528
Your Current Organism:
Flavobacteriales bacterium ALC1
NCBI taxonomy Id: 391603
Other names: F. bacterium ALC-1, Flavobacteriales bacterium ALC-1
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