STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP72156.1Hypothetical protein. (251 aa)    
Predicted Functional Partners:
EDP72153.1
Hypothetical protein.
 
     0.818
EDP72155.1
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
       0.723
EDP72152.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
       0.704
EDP72151.1
Hypothetical protein; COG1510 Predicted transcriptional regulators.
       0.690
EDP72154.1
Hypothetical protein.
       0.690
EDP72150.1
Hypothetical protein; Belongs to the GbsR family.
 
     0.617
EDP72157.1
Possible ECF-family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
       0.528
EDP72158.1
Hypothetical protein.
       0.528
EDP71801.1
Protease B.
  
     0.426
EDP70115.1
Peptidase, M27 (PrtB) family protein; COG5549 Predicted Zn-dependent protease.
  
     0.403
Your Current Organism:
Flavobacteriales bacterium ALC1
NCBI taxonomy Id: 391603
Other names: F. bacterium ALC-1, Flavobacteriales bacterium ALC-1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.