STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP72177.1Hypothetical protein; COG0767 ABC-type transport system involved in resistance to organic solvents, permease component. (245 aa)    
Predicted Functional Partners:
EDP72178.1
ABC transporter ATP-binding protein; COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component.
 
 0.996
EDP70442.1
COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component.
 
 0.965
EDP70714.1
Hypothetical protein; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
 
 0.950
EDP70441.1
ABC transporter, permease component; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
 
 0.922
EDP71254.1
Hypothetical protein; COG0457 FOG: TPR repeat.
   
  0.795
EDP71265.1
Hypothetical protein.
   
  0.795
EDP70443.1
ABC transporter, permease; COG0767 ABC-type transport system involved in resistance to organic solvents, permease component; Belongs to the MlaE permease family.
  
  
 
0.781
EDP70258.1
ABC transporter, ATP-binding protein; COG1137 ABC-type (unclassified) transport system, ATPase component.
 
  
  0.597
EDP71420.1
Lipid A disaccharide synthase, glycosyltransferase family 19 protein; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
  
    0.568
EDP72413.1
COG4775 Outer membrane protein/protective antigen OMA87.
 
     0.560
Your Current Organism:
Flavobacteriales bacterium ALC1
NCBI taxonomy Id: 391603
Other names: F. bacterium ALC-1, Flavobacteriales bacterium ALC-1
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