STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP72244.1Putative lipoprotein; COG2987 Urocanate hydratase. (185 aa)    
Predicted Functional Partners:
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
       0.772
EDP72514.1
Hypothetical protein; COG3577 Predicted aspartyl protease.
  
     0.623
EDP71491.1
porT protein; COG0566 rRNA methylases.
  
     0.530
EDP72242.1
Hypothetical protein; COG3291 FOG: PKD repeat.
       0.516
EDP72245.1
COG0659 Sulfate permease and related transporters (MFS superfamily).
       0.503
EDP69905.1
lysM domain protein; COG0313 Predicted methyltransferases.
  
     0.475
EDP72411.1
Hypothetical protein; COG0061 Predicted sugar kinase.
  
     0.424
EDP70332.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.422
EDP72240.1
Putative D-cysteine desulfhydrase (DcyD); COG2515 1-aminocyclopropane-1-carboxylate deaminase.
 
     0.413
EDP70213.1
Hypothetical protein; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
     0.400
Your Current Organism:
Flavobacteriales bacterium ALC1
NCBI taxonomy Id: 391603
Other names: F. bacterium ALC-1, Flavobacteriales bacterium ALC-1
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