STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP72472.1GlcNAc deacetylase-related protein, carbohydrate esterase family 4 protein; COG0726 Predicted xylanase/chitin deacetylase. (215 aa)    
Predicted Functional Partners:
EDP71482.1
Chitin synthase; COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
 
 
 0.953
EDP72470.1
Hypothetical protein.
 
     0.825
EDP71236.1
B-glycosyltransferase-related protein, glycosyltransferase family 2 protein; COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
 
 
 0.649
EDP71564.1
Putative transmembrane glycosyltransferase.
 
 
 0.625
EDP71310.1
COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
  
 
 0.560
EDP69756.1
Hypothetical protein.
     
 0.419
EDP72469.1
Universal stress protein.
       0.409
EDP70120.1
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
  
  
 0.403
Your Current Organism:
Flavobacteriales bacterium ALC1
NCBI taxonomy Id: 391603
Other names: F. bacterium ALC-1, Flavobacteriales bacterium ALC-1
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