STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP72554.1Hypothetical protein. (918 aa)    
Predicted Functional Partners:
EDP72553.1
Hypothetical protein; COG0457 FOG: TPR repeat.
 
   
 0.748
EDP72164.1
Hypothetical protein; COG0457 FOG: TPR repeat.
 
     0.730
EDP72552.1
Hypothetical protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.708
EDP70972.1
RNA polymerase, sigma-E factor; heat shock and oxidative stress; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.637
EDP72165.1
RNA polymerase, sigma-E factor; heat shock and oxidative stress; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.623
EDP72555.1
Hypothetical protein; COG0457 FOG: TPR repeat.
       0.558
EDP72558.1
Hypothetical protein; COG0492 Thioredoxin reductase.
 
     0.469
EDP72556.1
Putative transmembrane protein.
       0.408
EDP72557.1
Hypothetical protein; COG2095 Multiple antibiotic transporter.
       0.401
EDP72774.1
Putative adenylate/guanylate cyclase; COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain).
 
     0.400
Your Current Organism:
Flavobacteriales bacterium ALC1
NCBI taxonomy Id: 391603
Other names: F. bacterium ALC-1, Flavobacteriales bacterium ALC-1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.